[OmniOS-discuss] install GNUHEALTH
Dirk Willems
dirk.willems at exitas.be
Fri Aug 18 15:08:33 UTC 2017
Peter,
I started over from scratch and followed
http://wiki.omniosce.org/DevEnv.html
so now I have the |system/header||:)|
|
|
|And also remember again why I use the pkgsrc source because of the
packages like python postgress gpg etc ...|
|which I cannot find in the pkg repo.|
|
|
|So pkg gcc is installed
|
gnuhealth at GNUHealth:/export/home/gnuhealth/gnuhealth-3.2.1$ gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/opt/gcc-5.1.0/libexec/gcc/i386-pc-solaris2.11/5.1.0/lto-wrapper
Target: i386-pc-solaris2.11
Configured with: ./configure --prefix=/opt/gcc-5.1.0 --host
i386-pc-solaris2.11 --build i386-pc-solaris2.11 --target
i386-pc-solaris2.11 --with-boot-ldflags=-R/opt/gcc-5.1.0/lib
--with-gmp=/opt/gcc-5.1.0 --with-mpfr=/opt/gcc-5.1.0
--with-mpc=/opt/gcc-5.1.0 --enable-languages=c,c++,fortran,lto
--without-gnu-ld --with-ld=/bin/ld --with-as=/usr/bin/gas --with-gnu-as
--with-build-time-tools=/usr/gnu/i386-pc-solaris2.11/bin
Thread model: posix
gcc version 5.1.0 (GCC)
Tried to install it again with pkg gcc 5.1 hopefully ...
building 'psycopg2._psycopg' extension
creating build/temp.solaris-2.11-i86pc.64bit-3.6
creating build/temp.solaris-2.11-i86pc.64bit-3.6/psycopg
gcc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -O2 -pipe -O2
-I/usr/include -I/opt/local/include -I/opt/local/include/ncurses
-I/opt/local/include/db4 -pipe -O2 -pipe -O2 -I/usr/include
-I/opt/local/include -I/opt/local/include/ncurses
-I/opt/local/include/db4 -pipe -O2 -pipe -O2 -I/usr/include
-I/opt/local/include -I/opt/local/include/ncurses
-I/opt/local/include/db4 -fPIC -DPSYCOPG_DEFAULT_PYDATETIME=1
-DPSYCOPG_VERSION="2.7.3 (dt dec pq3 ext lo64)" -DPG_VERSION_NUM=90412
-DHAVE_LO64=1 -I/opt/local/include/python3.6 -I. -I/opt/local/include
-I/opt/local/include/postgresql/server -c psycopg/psycopgmodule.c -o
build/temp.solaris-2.11-i86pc.64bit-3.6/psycopg/psycopgmodule.o
In file included from /opt/local/include/python3.6/Python.h:50:0,
from ./psycopg/psycopg.h:34,
from psycopg/psycopgmodule.c:27:
/opt/local/include/python3.6/pyport.h:686:2: error: #error "LONG_BIT
definition appears wrong for platform (bad gcc/glibc config?)."
#error "LONG_BIT definition appears wrong for platform (bad
gcc/glibc config?)."
^
In file included from ./psycopg/psycopg.h:37:0,
from psycopg/psycopgmodule.c:27:
./psycopg/config.h:174:0: warning: "isinf" redefined
#define isinf(x) (!finite((x)) && (x)==(x))
^
In file included from /usr/include/math.h:33:0,
from /opt/local/include/python3.6/pyport.h:194,
from /opt/local/include/python3.6/Python.h:50,
from ./psycopg/psycopg.h:34,
from psycopg/psycopgmodule.c:27:
/usr/include/iso/math_c99.h:67:0: note: this is the location of the
previous definition
#define isinf(x) __builtin_isinf(x)
^
error: command 'gcc' failed with exit status 1
----------------------------------------
Command "/opt/local/bin/python3.6 -u -c "import setuptools,
tokenize;__file__='/tmp/pip-build-gd_pv6gq/psycopg2/setup.py';f=getattr(tokenize,
'open', open)(__file__);code=f.read().replace('\r\n',
'\n');f.close();exec(compile(code, __file__, 'exec'))" install --record
/tmp/pip-cdr8idal-record/install-record.txt
--single-version-externally-managed --compile --user --prefix=" failed
with error code 1 in /tmp/pip-build-gd_pv6gq/psycopg2/
2017-08-18 14:24:57 [INFO] Bailing out !
2017-08-18 14:24:57 [INFO] Cleaning up temp directories at
/tmp/gnuhealth_installer
2017-08-18 14:24:57 [INFO] removing base dir at
/export/home/gnuhealth//gnuhealth
Getting a different error now it's python who is complaining to bad :(
So I was thinking for trying /"//A *much* better idea woul be to remove
(or move out of the way) the entire include-fixed directory."/
So I installed the pkgsrc gcc49
changing the PATH
gnuhealth at GNUHealth:~$ gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/opt/local/gcc49/libexec/gcc/x86_64-sun-solaris2.11/4.9.4/lto-wrapper
Target: x86_64-sun-solaris2.11
Configured with: ../gcc-4.9.4/configure --disable-libstdcxx-pch
--enable-libssp --enable-languages='c obj-c++ objc go fortran c++'
--enable-shared --enable-long-long --with-local-prefix=/opt/local
--enable-threads=posix --with-boot-ldflags='-static-libstdc++
-static-libgcc -Wl,-R/opt/local/lib ' --disable-nls
--with-gxx-include-dir=/opt/local/gcc49/include/c++/ --without-gnu-ld
--with-ld=/usr/bin/ld --with-gnu-as --with-as=/opt/local/bin/gas
--prefix=/opt/local/gcc49 --build=x86_64-sun-solaris2.11
--host=x86_64-sun-solaris2.11 --infodir=/opt/local/gcc49/info
--mandir=/opt/local/gcc49/man
Thread model: posix
gcc version 4.9.4 (GCC)
But before modify something I thought just run it with gcc49 and see
what comes
So reinstall the script and now it is working great I love this :)
so it works with pkgsrc gcc49
Collecting psycopg2
Using cached psycopg2-2.7.3.tar.gz
Installing collected packages: psycopg2
Running setup.py install for psycopg2 ... done
Successfully installed psycopg2-2.7.3
Collecting vobject
Downloading vobject-0.9.5.tar.gz (58kB)
100% |################################| 61kB 1.3MB/s
Requirement already up-to-date: python-dateutil>=2.4.0 in
/export/home/gnuhealth/.local/lib/python3.6/site-packages (from vobject)
Requirement already up-to-date: six>=1.5 in
/export/home/gnuhealth/.local/lib/python3.6/site-packages (from
python-dateutil>=2.4.0->vobject)
Installing collected packages: vobject
Running setup.py install for vobject ... done
Successfully installed vobject-0.9.5
up to the next problem
2017-08-18 14:57:00 [INFO] OK.
2017-08-18 14:57:00 [INFO] Uncompressing the Tryton server...
tar: /tmp/gnuhealth_installer/4.2: No such file or directory
2017-08-18 14:57:00 [INFO] Bailing out !
2017-08-18 14:57:00 [INFO] Cleaning up temp directories at
/tmp/gnuhealth_installer
2017-08-18 14:57:00 [INFO] removing base dir at
/export/home/gnuhealth//gnuhealth
rm: Cannot remove any directory in the path of the current working directory
/export/home/gnuhealth//gnuhealth/tryton/server
rm: Unable to remove directory /export/home/gnuhealth//gnuhealth/tryton:
Directory not empty
rm: Unable to remove directory /export/home/gnuhealth//gnuhealth:
Directory not empty
Looking if I can fix this ...
Thank you very much, I keep posting ...
KR,
Dirk
On 18-08-17 13:18, Peter Tribble wrote:
>
>
> On Fri, Aug 18, 2017 at 12:12 PM, Dirk Willems <dirk.willems at exitas.be
> <mailto:dirk.willems at exitas.be>> wrote:
>
> Hello,
>
>
> In the file
> /opt/local/gcc7/lib/gcc/x86_64-sun-solaris2.11/7.1.0/include-fixed/limits.h
> stands
>
>
> #ifdef _GCC_NEXT_LIMITS_H
>
> #include_next <limits>
>
> #endif
>
>
> Can I uncomment the include_next <limits> or bad idea ?
>
>
> A *much* better idea woul be to remove (or move out of the way) the
> entire include-fixed directory.
>
> You're using pkgsrc here. There may be a good reason, but why not the
> system compiler?
>
> But, you do have the system/header package installed?
>
> Thanks
>
>
> KR,
>
>
> Dirk
>
>
>
> On 18-08-17 12:54, Dirk Willems wrote:
>>
>> Hello,
>>
>>
>> I try to install GNUHEALTH on OmniOSCE
>>
>>
>> but when I run the install script I got a error on gcc
>>
>>
>> Any suggestions what I'm doing wrong ?
>>
>>
>> I install the package py36-psycopg2-2.7.1
>>
>>
>> building 'psycopg2._psycopg' extension
>> creating build/temp.solaris-2.11-i86pc.64bit-3.6
>> creating build/temp.solaris-2.11-i86pc.64bit-3.6/psycopg
>> gcc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -O2
>> -pipe -O2 -I/usr/include -I/opt/local/include
>> -I/opt/local/include/ncurses -I/opt/local/include/db4 -pipe -O2
>> -pipe -O2 -I/usr/include -I/opt/local/include
>> -I/opt/local/include/ncurses -I/opt/local/include/db4 -pipe -O2
>> -pipe -O2 -I/usr/include -I/opt/local/include
>> -I/opt/local/include/ncurses -I/opt/local/include/db4 -fPIC
>> -DPSYCOPG_DEFAULT_PYDATETIME=1 -DPSYCOPG_VERSION="2.7.3 (dt dec
>> pq3 ext lo64)" -DPG_VERSION_NUM=90412 -DHAVE_LO64=1
>> -I/opt/local/include/python3.6 -I. -I/opt/local/include
>> -I/opt/local/include/postgresql/server -c psycopg/psycopgmodule.c
>> -o build/temp.solaris-2.11-i86pc.64bit-3.6/psycopg/psycopgmodule.o
>> In file included from
>> /opt/local/gcc7/lib/gcc/x86_64-sun-solaris2.11/7.1.0/include-fixed/syslimits.h:7:0,
>> from
>> /opt/local/gcc7/lib/gcc/x86_64-sun-solaris2.11/7.1.0/include-fixed/limits.h:34,
>> from /opt/local/include/python3.6/Python.h:11,
>> from ./psycopg/psycopg.h:34,
>> from psycopg/psycopgmodule.c:27:
>> /opt/local/gcc7/lib/gcc/x86_64-sun-solaris2.11/7.1.0/include-fixed/limits.h:194:15:
>> fatal error: limits.h: No such file or directory
>> #include_next <limits.h> /* recurse down to the real one */
>> ^~~~~~~~~~
>> compilation terminated.
>> error: command 'gcc' failed with exit status 1
>>
>> ----------------------------------------
>> Command "/opt/local/bin/python3.6 -u -c "import setuptools,
>> tokenize;__file__='/tmp/pip-build-68er_27q/psycopg2/setup.py';f=getattr(tokenize,
>> 'open', open)(__file__);code=f.read().replace('\r\n',
>> '\n');f.close();exec(compile(code, __file__, 'exec'))" install
>> --record /tmp/pip-_oz9xywx-record/install-record.txt
>> --single-version-externally-managed --compile --user --prefix="
>> failed with error code 1 in /tmp/pip-build-68er_27q/psycopg2/
>> 2017-08-18 10:37:17 [INFO] Bailing out !
>> 2017-08-18 10:37:17 [INFO] Cleaning up temp directories at
>> /tmp/gnuhealth_installer
>> 2017-08-18 10:37:17 [INFO] removing base dir at
>> /export/home/gnuhealth//gnuhealth
>> gnuhealth at GNUHealth:/export/home/gnuhealth/gnuhealth-3.2.1$
>> <mailto:gnuhealth at GNUHealth:/export/home/gnuhealth/gnuhealth-3.2.1$>
>> vi gnuhealth-setup
>>
>> gnuhealth at GNUHealth:/export/home/gnuhealth/gnuhealth-3.2.1$
>> <mailto:gnuhealth at GNUHealth:/export/home/gnuhealth/gnuhealth-3.2.1$>
>> echo $PATH
>> /opt/local/gcc7/bin:/opt/local/gcc7/lib:/opt/local/sbin:/opt/local/bin:/usr/bin:
>>
>> gnuhealth at GNUHealth:/export/home/gnuhealth/gnuhealth-3.2.1$
>> <mailto:gnuhealth at GNUHealth:/export/home/gnuhealth/gnuhealth-3.2.1$>
>> vi
>> /opt/local/gcc7/lib/gcc/x86_64-sun-solaris2.11/7.1.0/include-fixed/limits.h
>>
>> gnuhealth at GNUHealth:/export/home/gnuhealth/gnuhealth-3.2.1$
>> <mailto:gnuhealth at GNUHealth:/export/home/gnuhealth/gnuhealth-3.2.1$>
>> vi
>> /opt/local/gcc7/lib/gcc/x86_64-sun-solaris2.11/7.1.0/include-fixed/syslimits.h
>>
>>
>> Thanks in advance
>>
>>
>> Kind Regards,
>>
>>
>> Dirk
>>
>>
>> --
>> Dirk Willems
>> System Engineer
>>
>>
>> +32 (0)3 443 12 38 <tel:+32%203%20443%2012%2038>
>> Dirk.Willems at exitas.be <mailto:Dirk.Willems at exitas.be>
>>
>> Quality. Passion. Personality
>>
>> www.exitas.be <http://www.exitas.be/> | Veldkant 31 | 2550 Kontich
>>
>> Illumos OmniOS Installation and Configuration Implementation
>> Specialist.
>> Oracle Solaris 11 Installation and Configuration Certified
>> Implementation Specialist.
>>
>>
>>
>> _______________________________________________
>> OmniOS-discuss mailing list
>> OmniOS-discuss at lists.omniti.com
>> <mailto:OmniOS-discuss at lists.omniti.com>
>> http://lists.omniti.com/mailman/listinfo/omnios-discuss
>> <http://lists.omniti.com/mailman/listinfo/omnios-discuss>
>
> --
> Dirk Willems
> System Engineer
>
>
> +32 (0)3 443 12 38 <tel:+32%203%20443%2012%2038>
> Dirk.Willems at exitas.be <mailto:Dirk.Willems at exitas.be>
>
> Quality. Passion. Personality
>
> www.exitas.be <http://www.exitas.be/> | Veldkant 31 | 2550 Kontich
>
> Illumos OmniOS Installation and Configuration Implementation
> Specialist.
> Oracle Solaris 11 Installation and Configuration Certified
> Implementation Specialist.
>
>
> _______________________________________________
> OmniOS-discuss mailing list
> OmniOS-discuss at lists.omniti.com
> <mailto:OmniOS-discuss at lists.omniti.com>
> http://lists.omniti.com/mailman/listinfo/omnios-discuss
> <http://lists.omniti.com/mailman/listinfo/omnios-discuss>
>
>
>
>
> --
> -Peter Tribble
> http://www.petertribble.co.uk/ - http://ptribble.blogspot.com/
--
Dirk Willems
System Engineer
+32 (0)3 443 12 38
Dirk.Willems at exitas.be <mailto:Dirk.Willems at exitas.be>
Quality. Passion. Personality
www.exitas.be <http://www.exitas.be/> | Veldkant 31 | 2550 Kontich
Illumos OmniOS Installation and Configuration Implementation Specialist.
Oracle Solaris 11 Installation and Configuration Certified
Implementation Specialist.
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